Package index • nlmixr2

Running/Parsing `nlmixr2` model

nlmixr2(): nlmixr2 fits population PK and PKPD non-linear mixed effects models.

Estimation options

foceiControl(): Control Options for FOCEi

saemControl(): Control Options for SAEM

nlmeControl(): Control Values for nlme Fit with extra options for nlmixr

bobyqaControl(): Control for bobyqa estimation method in nlmixr2

lbfgsb3cControl(): Control for lbfgsb3c estimation method in nlmixr2

n1qn1Control(): Control for n1qn1 estimation method in nlmixr2

newuoaControl(): Control for newuoa estimation method in nlmixr2

nlmControl(): nlmixr2 defaults controls for nlm

nlminbControl(): nlmixr2 nlminb defaults

nlsControl(): nlmixr2 defaults controls for nls

optimControl(): nlmixr2 optim defaults

uobyqaControl(): Control for uobyqa estimation method in nlmixr2

tableControl(): Output table/data.frame options

Post-fit table functions

addNpde(): NPDE calculation for nlmixr2

addCwres(): Add CWRES

addTable(): Add table information to nlmixr2 fit object without tables

Utility functions for nlmixr2 fits

bootplot(): Produce delta objective function for boostrap

bootstrapFit(): Bootstrap nlmixr2 fit

preconditionFit(): Linearly re-parameterize the model to be less sensitive to rounding errors

profileFixed(): Estimate the objective function values for a model while fixing defined parameter values

profileFixedSingle(): Estimate the objective function values for a model while fixing defined parameter values

profileLlp(): Profile confidence intervals with log-likelihood profiling

setOfv(): Set/get Objective function type for a nlmixr2 object

traceplot(): Produce trace-plot for fit if applicable

vpcCens(): VPC based on ui model

vpcCensTad(): VPC based on ui model

vpcPlot(): VPC based on ui model

vpcPlotTad(): VPC based on ui model

vpcSim(): VPC simulation

Installation support

nlmixr2CheckInstall(): Check your nlmixr2 installation for potential issues